Style files to use biblatex in ecological journals

ecobiblatex is an ongoing project to create styles files (cbx and bbx) to use biblatex for ecological journals. It’s entirely written in LaTeX.

Fast generation of null models for bipartite webs

CNullModels is a C program using the GSL, who can do Type I and Type II null models in less time it takes to say “Whoah, dude, this program is like, super fast”.

Analyzing bipartite networks in Python

bipy is a Python module to analyse bipartite ecological networks, integrated with NetworkX

Phylogenetic tree classes

PyCoPhy is a set of Python classes to keep track of, and manipulate, very basic phylogenetic trees, with built-in Newick export. It’s designed to be easy to embed in other simulations.

Measuring Ecological Specificity

ESM is a R package to measure ecological specialization at the species level. Most of its functions are included in bipy.